Object-based mapping of temperate marine habitats from multi-resolution remote sensing data

PhD ThesisHabitat maps are needed to inform marine spatial planning but current methods of field survey and data interpretation are time-consuming and subjective. Object-based image analysis (OBIA) and remote sensing could deliver objective, cost-effective solutions informed by ecological knowledge. OBIA enables development of automated workflows to segment imagery, creating ecologically meaningful objects which are then classified based on spectral or geometric properties, relationships to other objects and contextual data. Successfully applied to terrestrial and tropical marine habitats for over a decade, turbidity and lack of suitable remotely sensed data had limited OBIA’s use in temperate seas to date. This thesis evaluates the potential of OBIA and remote sensing to inform designation, management and monitoring of temperate Marine Protected Areas (MPAs) through four studies conducted in English North Sea MPAs. An initial study developed OBIA workflows to produce circalittoral habitat maps from acoustic data using sequential threshold-based and nearest neighbour classifications. These methods produced accurate substratum maps over large areas but could not reliably predict distribution of species communities from purely physical data under largely homogeneous environmental conditions. OBIA methods were then tested in an intertidal MPA with fine-scale habitat heterogeneity using high resolution imagery collected by unmanned aerial vehicle. Topographic models were created from the imagery using photogrammetry. Validation of these models through comparison with ground truth measurements showed high vertical accuracy and the ability to detect decimetre-scale features. The topographic and spectral layers were interpreted simultaneously using OBIA, producing habitat maps at two thematic scales. Classifier comparison showed that Random Forests Abstract ii outperformed the nearest neighbour approach, while a knowledge-based rule set produced accurate results but requires further research to improve reproducibility. The final study applied OBIA methods to aerial and LiDAR time-series, demonstrating that despite considerable variability in the data, pre- and post-classification change detection methods had sufficient accuracy to monitor deviation from a background level of natural environmental fluctuation. This thesis demonstrates the potential of OBIA and remote sensing for large-scale rapid assessment, detailed surveillance and change detection, providing insight to inform choice of classifier, sampling protocol and thematic scale which should aid wider adoption of these methods in temperate MPAs.Natural Environment Research Council and Natural Englan

Achieving consensus on psychosocial and physical rehabilitation management for people living with kidney disease

From Crossref journal articles via Jisc Publications RouterHistory: epub 2023-05-19, issued 2023-05-19Article version: AMPublication status: PublishedPelagia Koufaki - ORCID: 0000-0002-1406-3729 https://orcid.org/0000-0002-1406-3729Background People living with chronic kidney disease (CKD) need to be able to live well with their condition. The provision of psychosocial interventions (psychological, psychiatric, and social care) and physical rehabilitation management is variable across England, as well as the rest of the United Kingdom. There is a need for clear recommendations for standards of psychosocial and physical rehabilitation care for people living with CKD, and guidance for the commissioning and measurement of these services. The NHS England Renal Services Transformation Programme (RSTP) supported a programme of work and modified Delphi process to address the management of psychosocial and physical rehabilitation care as part of a larger body of work to formulate a comprehensive commissioning toolkit for renal care services across England. We sought to achieve expert consensus regarding the psychosocial and physical rehabilitation management of people living with CKD in England and the rest of the UK. Method A Delphi consensus method was used to gather and refine expert opinions of senior members of the kidney multi-disciplinary team (MDT) and other key stakeholders in the UK. An agreement was sought on 16 statements reflecting aspects of psychosocial and physical rehabilitation management for people living with CKD. Results Twenty-six expert practitioners and other key stakeholders, including lived experience representatives, participated in the process. The consensus (>80% affirmative votes) amongst the respondents for all 16 statements was high. Nine recommendation statements were discussed and refined further to be included in the final iteration of the ‘Systems’ section of the NHS England RSTP commissioning toolkit. These priority recommendations reflect pragmatic solutions that can be implemented in renal care and include recommendations for a holistic well-being assessment for all people living with CKD who are approaching dialysis, or who are at listing for kidney transplantation, which includes the use of validated measurement tools to assess the need for further intervention in psychosocial and physical rehabilitation management. It is recommended that the scores from these measurement tools be included in the NHS England Renal Data Dashboard. There was also a recommendation for referral as appropriate to NHS Talking therapies, psychology, counselling or psychotherapy, social work or liaison psychiatry for those with identified psychosocial needs. The use of digital resources was recommended to be used in addition to face-to-face care to provide physical rehabilitation, and all healthcare professionals should be educated to recognise psychosocial and physical rehabilitation needs and refer/sign-post people with CKD to appropriate services. Conclusion There was high consensus amongst senior members of the kidney MDT and other key stakeholders, including those with lived experience, in the UK on all aspects of the psychosocial and physical rehabilitation management of people living with CKD. The results of this process will be used by NHS England to inform the ‘Systems’ section of the commissioning toolkit and data dashboard and to inform the National Standards of Care for people living with CKD.inpressinpres

An isotopic study of palaeodiet at the Circle and the Xemxija tombs

The ERC-funded FRAGSUS Project (Fragility and sustainability in small island environments: adaptation, culture change and collapse in prehistory, 2013–18) led by Caroline Malone has focused on the unique Temple Culture of Neolithic Malta and its antecedents. This third volume builds on the achievements of Mortuary customs in prehistoric Malta, published by the McDonald Institute in 2009. It seeks to answer many questions posed, but left unanswered, of the more than 200,000 fragments of mainly commingled human remains from the Xagħra Brochtorff Circle on Gozo. The focus is on the interpretation of a substantial, representative subsample of the assemblage, exploring dentition, disease, diet and lifestyle, together with detailed understanding of chronology and the affinity of the ancient population associated with the ‘Temple Culture’ of prehistoric Malta. The first studies of genetic profiling of this population, as well as the results of intra-site GIS and visualization, taphonomy, health and mobility, offer important insights into this complex mortuary site and its ritual. Remarkable evidence on the bioanthropology of care practised by these populations, together with a relatively low level of interpersonal violence, and examples of longevity, reveal new aspects about the Neolithic Maltese. Detailed case studies employing computerized tomography describe disease such as =scurvy and explore dietary issues, whilst physical activity and body size have been assessed through biomechanical analysis, supported by taphonomic study, isotopic analyses, a review of mortuary practices during prehistory and a robust new chronology. The results form a rich contextualized body of material that advances understanding of cultural change within the context of small island insularity, and provides biological comparisons for the graphic figurative art of early Malta. These data and the original assemblage are conserved in the National Museum of Archaeology in Valletta as a resource for future study.This project has received funding from the European Research Council (ERC) under the European Union’s Seventh Framework Programme (FP7-2007-2013) (Grant agreement No. 323727)

Emerging technologies for biological recording

Technology has played an important role in biological recording for hundreds of years, from the invention of the microscope to the microprocessor. We review current and emerging technologies that are changing the way we study and record the natural world. From websites to smartphones, data capture is becoming easier, faster and more accessible. Increases in data volume and wider participation raises concerns over data quality, which are being addressed with accurate sensors, automated validation tools, and verification platforms that utilize expert taxonomists and collective intelligence to ensure the highest level of quality possible. Data curation and interoperability have been transformed in the information age. The need to collate data at continental and global scales and across institutions continues to drive the formation of standardized data formats and taxonomies. Once collated these data can be analysed using high-performance computing, and used to provide valuable feedback in the form of interactive visualizations, computer-generated text or even game-like rewards. We also address issues arising from these technological developments. For example: how will the role of the expert naturalist change? Is biological recording undergoing a revolutionary or evolutionary process? How is technology leading to the empowerment of the public

Achieving consensus on psychosocial and physical rehabilitation management for people living with kidney disease

Background People living with chronic kidney disease (CKD) need to be able to live well with their condition. The provision of psychosocial interventions (psychological, psychiatric and social care) and physical rehabilitation management is variable across England, as well as the rest of the UK. There is a need for clear recommendations for standards of psychosocial and physical rehabilitation care for people living with CKD, and guidance for the commissioning and measurement of these services. The National Health Service (NHS) England Renal Services Transformation Programme (RSTP) supported a programme of work and modified Delphi process to address the management of psychosocial and physical rehabilitation care as part of a larger body of work to formulate a comprehensive commissioning toolkit for renal care services across England. We sought to achieve expert consensus regarding the psychosocial and physical rehabilitation management of people living with CKD in England and the rest of the UK. Methods A Delphi consensus method was used to gather and refine expert opinions of senior members of the kidney multi-disciplinary team (MDT) and other key stakeholders in the UK. An agreement was sought on 16 statements reflecting aspects of psychosocial and physical rehabilitation management for people living with CKD. Results Twenty-six expert practitioners and other key stakeholders, including lived experience representatives, participated in the process. The consensus (>80% affirmative votes) amongst the respondents for all 16 statements was high. Nine recommendation statements were discussed and refined further to be included in the final iteration of the ‘Systems’ section of the NHS England RSTP commissioning toolkit. These priority recommendations reflect pragmatic solutions that can be implemented in renal care and include recommendations for a holistic wellbeing assessment for all people living with CKD who are approaching dialysis, or who are at listing for kidney transplantation, which includes the use of validated measurement tools to assess the need for further intervention in psychosocial and physical rehabilitation management. It is recommended that the scores from these measurement tools be included in the NHS England Renal Data Dashboard. There was also a recommendation for referral as appropriate to NHS Talking Therapies, psychology, counselling or psychotherapy, social work or liaison psychiatry for those with identified psychosocial needs. The use of digital resources was recommended to be used in addition to face-to-face care to provide physical rehabilitation, and all healthcare professionals should be educated to recognize psychosocial and physical rehabilitation needs and refer/sign-post people with CKD to appropriate services. Conclusion There was high consensus amongst senior members of the kidney MDT and other key stakeholders, including those with lived experience, in the UK on all aspects of the psychosocial and physical rehabilitation management of people living with CKD. The results of this process will be used by NHS England to inform the ‘Systems’ section of the commissioning toolkit and data dashboard and to inform the National Standards of Care for people living with CKD.</p